Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

LIQA: Long-read Isoform Quantification and Analysis

Simulation based benchmarking of isoform quantification in single-cell RNA- seq

FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses

WikiJournal of Science/A broad introduction to RNA-Seq - Wikiversity

3. Raw data processing — Single-cell best practices

LIQA: long-read isoform quantification and analysis, Genome Biology

Evaluation and comparison of computational tools for RNA-seq isoform quantification, BMC Genomics

RNA-Seq Workflow

LIQA: Long-read Isoform Quantification and Analysis

Bulk RNA sequencing analysis of developing human induced pluripotent cell-derived retinal organoids